JMP® Genomics
See exactly what your genomics data is trying to tell you.
With JMP Genomics, you can.
This unique desktop product from SAS dynamically links powerful statistical analysis with advanced graphics to provide a complete and comprehensive picture of your research results.
With more than 100 analytic procedures, JMP Genomics meets all your research needs, whether you’re working in genetics, microarrays or proteomics. As your studies expand to new areas, you can explore new data in a familiar environment – without buying new software.
Interactive volcano plot graphics allow easy identification and selection of sets of significantly changing genes.
JMP Genomics brings to every task the full power of the JMP statistical discovery platform, enhanced with industry-leading SAS analytics tailored for heavy-duty processing of genomics data sets. Our menu-driven system simplifies workflow throughout the process, and JMP data visualization capabilities translate results into interactive graphical displays at the end.
JMP Genomics facilitates the systematic identification of statistically significant data by offering:
- Whole-genome SNP analysis on very large data sets.
- Powerful, deep and broad statistical models that improve specificity, sensitivity and stability of results.
- Efficient clustering tools that help scientists identify the biological pathways affected by treatment or disease.
- Proven design of experiment (DOE) tools for creating the most efficient experiments.
- Quality control tools that remove poor data from analyses.
- Dialogs that employ JMP Scripting Language (JSL) to launch SAS macros in the background.
More than 100 analytic processes are accessible through the JMP Genomics menu, including:
- Custom input processes for a variety of popular genomic data formats.
- Routines for building experimental design files.
- A rich collection of SAS data set utility routines for both tall and wide data sets.
- Genetic marker processes for basic statistics, association testing, model-free linkage, and haplotype analysis.
- Spectral preprocessing routines for both 2-D and 3-D spectral data.
- Processes for normalization, quality control, pattern discovery, row-by-row modeling, and predictive modeling.
- Annotation analysis and links to a wide variety of genomics Web sites.
- Power and sample size calculations.
The system is customizable and extendable, and it includes an extensive programmer’s guide detailing how to add your own processes. Processes can invoke other packages like R Bioconductor. A full-featured XML syntax is available for automatically generating graphical user interface dialogs.
Affymetrix and GeneChip are registered trademarks owned or used by Affymetrix, Inc. GeneChip-compatible is a trademark owned or used by Affymetrix, Inc.
Free Web Training
If you’re new to JMP Genomics – or if you just want to find out what’s new in our software – sign up now for complimentary training delivered live to your desktop. Register for one or more of the 60- or 90-minute sessions, which are usually offered twice a month.
Learn how to streamline your genomic data analysis with new features in JMP Genomics 3.2. JMP Genomics experts Doug Robinson and Jordan Hiller present.
Chris Kirchberg of Ingenuity Systems, a JMP Genomics partner, takes part in many sessions to discuss how the integration of JMP Genomics with Ingenuity Pathways Analysis software places analysis results into biological context.
About Our Partnerships
JMP Genomics is Affymetrix GeneChip-compatible™ for expression, exon expression and SNP analysis.
Through its JMP Genomics software, SAS is a charter member of the Illumina Connect program, which allows software partners to design plug-ins for the BeadStudio platform for export of Illumina data to partner applications.
JMP Genomics also participates in the Ingenuity Systems Partners Program, recognizing the interoperability of JMP Genomics with the Ingenuity Pathways Analysis system.
Read more about JMP Genomics partners.
View the JMP Genomics Product Brief
(PDF file, 546KB, June 2007)
Contact JMP Genomics Sales
877.594.6567 (US)
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